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PART 1. ANALYZING DNA, RNA, AND PROTEIN SEQUENCES IN DATABASES. Chapter 1. Introduction. Chapter 2. Access to Sequence and Literature Databases. Chapter 3. Pairwise Sequence Alignment. Chapter 4. Basic Local Alignmnet Search Tool (BLAST). Chapter 5. Advanced BLAST Searching. PART 2. GENOME-WIDE ANALYSIS OF RNA AND PROTEIN. Chapter 6. Genome-wide Analysis of Gene Expression. Chapter 7. Gene Expression: Microarrays. Chapter 8. Protein Analysis and Proteomics. Chapter 9. Protein Structure. Chapter 10. Multiple Sequence Alignment. Chapter 11. Molecular Phylogeny. PART 3. GENOME ANALYSIS. Chapter 12. Completed Genomes and the Tree of Life. Chapter 13. Completed Genomes: Viruses. Cchapter 14. Completed Genomes: Bacteria and Archaea. Chapter 15. Eukaryotic Genomes: Fungi Chapter 16. Eukaryotic Genomes: From Parasites to Primates. Chapter 17. The Human Genome. Chapter 18. Human Disease. Chapter 19. Conclusions. Appendix 1. GCG for Protein and DNA Analysis. Glossary. Index. _