Table of contents for A handbook of statistical analyses using R / Brian S. Everitt, Torsten Hothorn.

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1 An Introduction to R                                        1
1.1 What Is R?                                             1
1.2 Installing R                                           2
1.3 Help and Documentation                                 4
1.4 Data Objects in R                                      5
1.5 Data Import and Export                                 9
1.6 Basic Data Manipulation                               11
1.7 Simple Summary Statistics                             14
1.8 Organising an Analysis                                18
1.9 Summary                                               20
"2 Simple Inference                                          21
2.1 Introduction                                          21
2.2 Statistical Tests                                     25
2.3 Analysis Using R                                      29
2.4 Summary                                               39
3 Conditional Inference                                      41
3.1 Introduction                                          41
3.2 Conditional Test Procedures                           44
3.3 Analysis Using R                                      46
3.4 Summary                                               53
4 Analysis of Variance                                       55
4.1 Introduction                                          55
4.2 Analysis of Variance                                  58
4.3 Analysis Using R                                      59
4.4 Summary                                               71
5 Multiple Linear Regression                                 73
5.1 Introduction                                          73
5.2 Multiple Linear Regression                            74
5.3 Analysis Using R                                      76
5.4 Summary                                               85
6 Logistic Regression and Generalised Linear Models          89
6.1 Introduction                                           89
6.2 Logistic Regression and Generalised Linear Models      92
6.3 Analysis Using R                                       94
6.4 Summary                                               106
7 Density Estimation                                        109
7.1 Introduction                                          109
7.2 Density Estimation                                    111
7.3 Analysis Using R                                      117
7.4 Summary                                               125
8 Recursive Partitioning                                    131
8.1 Introduction                                          131
8.2 Recursive Partitioning                                131
8.3 Analysis Using R                                      133
8.4 Summary                                               141
9 Survival Analysis                                         143
9.1 Introduction                                          143
9.2 Survival Analysis                                     144
9.3 Analysis Using R                                      150
9.4 Summary                                               157
10 Analysing Longitudinal Data I                            159
10.1 Introduction                                         159
10.2 Analysing Longitudinal Data                          162
10.3 Linear Mixed Effects Models                          163
10.4 Analysis Using R                                     165
10.5 Prediction of Random Effects                         168
10.6 The Problem of Dropouts                              169
10.7 Summary                                              172
11 Analysing Longitudinal Data II                           175
11.1 Introduction                                         175
11.2 Generalised Estimating Equations                     177
11.3 Analysis Using R                                     179
11.4 Summary                                              194
12 Meta-Analysis                                            197
12.1 Introduction                                         197
12.2 Systematic Reviews and Meta-Analysis                 199
12.3 Statistics of Meta-Analysis                          201
12.4 Analysis Using R                                     202
12.5 Meta-Regression                                      203
12.6 Publication Bias                                    207
12.7 Summary                                             211
13 Principal Component Analysis                            215
13.1 Introduction                                        215
13.2 Principal Component Analysis                        215
13.3 Analysis Using R                                    218
13.4 Summary                                             223
14 Multidimensional Scaling                                227
14.1 Introduction                                        227
14.2 Multidimensional Scaling                            227
14.3 Analysis Using R                                    233
14.4 Summary                                             239
15 Cluster Analysis                                        243
15.1 Introduction                                        243
15.2 Cluster Analysis                                    245
15.3 Analysis Using R                                    248
15.4 Summary                                             253