Bibliographic record and links to related information available from the Library of Congress catalog.
Note: Contents data are machine generated based on pre-publication provided by the publisher. Contents may have variations from the printed book or be incomplete or contain other coding.
CONTENTS SECTION I INTRODUCTION TO ENVIRONMENTAL MICROBIOLOGY VOLUME EDITOR: JAY L. GARLAND 1. Introduction to Environmental Microbiology Christon J. Hurst 2. Neighborhoods and Communities: No Microbe Is an Island Christon J. Hurst 3. Prokaryotic Diversity: Form, Ecophysiology, and Habitat Frederick S. Colwell and Edward R. Leadbetter SECTION II GENERAL METHODOLOGY VOLUME EDITOR: JAY L. GARLAND, SECTION EDITOR: SEAN O'CONNELL 4. Overview: General Methodology Jay L. Garland 5. Analytical Imaging and Microscopy Techniques J. R. Lawrence, D. R. Korber, and T. R. Neu 6. Cultivation of Bacteria and Fungi Ralph S. Tanner 7. Cultivation of Algae and Protozoa John G. Day, Undine Achilles-Day, Susan Brown, and Alan Warren 8. Cultivation and Assay of Animal Viruses Pierre Payment 9. Cultivation of Microbial Consortia and Communities Gideon M. Wolfaardt, Darren R. Korber, and John R. Lawrence 10. Lipid Analyses for Viable Microbial Biomass, Community Composition, Metabolic Status, and In Situ Metabolism David B. Hedrick, Aaron D. Peacock, and David C. White 11. Physiological Profiling of Microbial Communities Jay L. Garland, Colin D. Campbell, and Aaron L. Mills 12. Molecular Approaches for the Measurement of Density, Diversity, and Phylogeny Wen-Tso Liu and David A. Stahl 13. Phylogenetic and Genomic Analysis Dirk Gevers and Tom Coenye 14. Bioreporters, Biosensors, and Microprobes Robert S. Burlage 15. Ecology at Long-Term Research Sites: Integrating Microbes and Ecosystems John E. Hobbie, Michele Bahr, and Anna-Louise Reysenbach 16. Quality Assurance A. J. Cross-Smiecinski 17. Issues of Study Design and Statistical Analysis for Environmental Microbiology Kenneth M. Portier and Ronald Corstanje SECTION III WATER MICROBIOLOGY IN PUBLIC HEALTH VOLUME EDITOR: CHRISTON J. HURST, SECTION EDITOR: GARY A. TORANZOS 18. Overview of Water Microbiology as It Relates to Public Health Christon J. Hurst 19. Waterborne Transmission of Infectious Agents Christine L. Moe 20. Detection of Microorganisms in Environmental Freshwaters and Drinking Waters Gary A. Toranzos, Gordon A. McFeters, Juan Jose Borrego, and Marion Savill 21. Detection of Protozoan Parasites in Source and Finished Drinking Water Frank W. Schaefer III 22. Microbial Indicators of Marine Recreational Water Quality Stephen B. Weisberg, Rachel T. Noble, and John F. Griffith 23. Detection of Viruses in Environmental Waters, Wastewater, and Wastewater Biosolids Christon J. Hurst and Kelly A. Reynolds 24. Detection of Bacterial Pathogens in Wastewater and Sludge Richard E. Danielson and Robert C. Cooper 25. Detection of Pathogenic Bacteria, Viruses, and Parasitic Protozoa in Shellfish Lee-Ann Jaykus 26. Control of Microorganisms in Source Water and Drinking Water Morteza Abbaszadegan and Aaron B. Margolin 27. Assessing the Efficiency of Wastewater Treatment Wesley O. Pipes and James T. Zmuda 28. Modeling the Fate of Microorganisms in Water, Wastewater, and Soil Christon J. Hurst 29. Estimating the Risk of Infectious Disease Associated with Pathogens in Drinking Water Christon J. Hurst 30. Toxic Photosynthetic Microbes Wesley Clinton Jackson, Jr. SECTION IV AQUATIC ENVIRONMENTS VOLUME EDITOR: CHRISTON J. HURST, SECTION EDITOR: MEREDITH A. J. HULLAR 31. Advances in Aquatic Microbial Ecology Meredith Hullar 32. Cultivating Microorganisms from Dilute Aquatic Environments: Melding Traditional Methodology with New Cultivation Techniques and Molecular Methods Jamie W. Becker, Marina L. Brandon, and Michael S. Rappe 33. Primary Productivity and Producers Hans W. Paerl 34. Bacterial Secondary Productivity Gerardo Chin-Leo and Colleen T. Evans 35. Community Structure: Bacteria and Archaea Jed A. Fuhrman 36. Viral Community Structure Alexander I. Culley and Curtis A. Suttle 37. Protistan Community Structure David A. Caron and Astrid Schnetzer 38. Decomposition and Fungal Community Structure in Aquatic Environments Felix Barlocher 39. Bacterial Organic Carbon Cycling in Aquatic Environments Matthew T. Cottrell 40. Environmental Genomics of C1 Metabolism Marina G. Kalyuzhnaya, Olivier Nercessian, Mary E. Lidstrom, and Ludmila Chistoserdova 41. Sulfur Cycling Mark E. Hines, Pieter T. Visscher, Andreas P. Teske, and Richard Devereux 42. Nitrogen Cycling in Aquatic Environments Bess B. Ward 43. The Marine Phosphorus Cycle David M. Karl 44. Microbial Metal Cycling in Aquatic Environments Eric E. Roden 45. Biofilms on Living Surfaces Jeremy S. Webb, Mike Taylor, Scott Rice, Torsten Thomas, Dhana Rao, Diane McDougald, and Staffan Kjelleberg 46. Extreme High-Pressure Marine Environments Jody W. Deming SECTION V SOIL, RHIZOSPHERE, AND PHYLLOSPHERE VOLUME EDITOR: DAVID A. LIPSON 47. Introduction and Overview: Soil, Rhizosphere, and Phyllosphere David Lipson 48. Surface Soil Microbial Sampling Methods David B. Knaebel 49. Application of Phylogenetic Techniques in Studies of Soil Microbial Communities Ryan T. Jones, Elizabeth K. Costello, and Andrew P. Martin 50. Sampling Viruses from Soil Christon J. Hurst and Kelly A. Reynolds 51. Isolation, Culture, and Detection of Arbuscular Mycorrhizal Fungi David G. Sylvia, Wittaya Kaonongbua, and James D. Bever 52. Isolation, In Planta Detection, and Uses of Endophytic Bacteria for Plant Protection Charles W. Bacon and Dorothy M. Hinton 53. Methods of Soil Microbial Community Analysis Andrew Ogram, Hector Castro, and Ashvini Chauhan 54. Microarrays: Design and Use for Agricultural and Environmental Applications Scot E. Dowd, Hiroshi Ishizaki, and Jeanette Thurston Enriquez 55. PCR: Agricultural and Environmental Applications for Soil Microbes Scot E. Dowd and Ian L. Pepper 56. Quantification of Nitrogen Transformations David D. Myrold 57. Quantifying the Metabolic Activity of Soil- and Plant-Associated Microbes Guy R. Knudsen 58. Soil Enzymes: Linking Proteomics and Ecological Process Steven D. Allison, Tracy B. Gartner, Keri Holland, Michael Weintraub, and Robert L. Sinsabaugh 59. Use of Immunofluorescence Microscopy and Fluorescence In Situ Hybridization Combined with CMEIAS and Other Image Analysis Tools To Study the Autecology of Soil- and Plant-Associated Microbes Frank B. Dazzo, Michael Schmid, and Anton Hartmann 60. Reporter Gene Systems Useful in Evaluating In Situ Gene Expression by Soil- and Plant-Associated Bacteria Johan Leveau, Joyce E. Loper, and Steven E. Lindow 61. Identifying Microorganisms Involved in Specific In Situ Functions: Experimental Design Considerations for rRNA Gene-Based Population Studies and Sequence-Selective PCR Assays James Borneman, J. Ole Becker, Elizabeth Bent, Brian Lanoil, Brian McSpadden Gardener, Rabiu Olatinwo, Laura Presley, Alexandra J. Scupham, Lea Valinsky, and Bei Yin 62. A Review of Mobile Gene Elements and Methods To Study Horizontal Gene Transfer in Environmental Microbial Communities Diana R. Nemergut, Tamar Barkay, and Jonna Coombs 63. Research Methods for Microorganisms Interacting with Arthropods in Soil Ann E. Hajek 64. Lipid Fingerprinting of Soil Microbial Communities Ana Lucia Cordova- Kreylos and Kate M. Scow SECTION VI SUBSURFACE AND LANDFILLS VOLUME EDITOR: AARON L. MILLS 65. Overview of Issues in Subsurface and Landfill Microbiology Ronald W. Harvey, Joseph M. Suflita, Michael J. McInerney, and Aaron L. Mills 66. Drilling, Coring, and Sampling Subsurface Environments Thomas L. Kieft, Tommy J. Phelps, and James K. Fredrickson 67. Anaerobic Decomposition of Refuse in Landfills and Methane Oxidation in Landfill Covers Helene H. Hilger and Morton A. Barlaz 68. Biogeochemistry of Aquifer Systems Isabelle M. Cozzarelli and Johanna V. Weiss 69. Determining the Terminal Electron-Accepting Reaction in the Saturated Subsurface Richard L. Smith and Steve Harris 70. Transport of Microorganisms in the Terrestrial Subsurface: In Situ and Laboratory Methods Ronald W. Harvey, Hauke Harms, and Lee Landkamer 71. Oil Field Microbiology Michael J. McInerney, Gerrit Voordouw, Gary E. Jenneman, and Kerry L. Sublette 72. Placement of Drinking Water Wells and Their Protection Marylynn V. Yates SECTION VII AEROBIOLOGY VOLUME EDITOR: LINDA D. STETZENBACH, SECTION EDITOR: MARK P. BUTTNER 73. Introduction to Aerobiology Linda D. Stetzenbach 74. Sampling for Airborne Microorganisms Sergey A. Grinshpun, Mark P. Buttner, and Klaus Willeke 75. Analysis of Bioaerosol Samples Patricia Cruz and Mark P. Buttner 76. Fate and Transport of Microorganisms in Air Alan Jeff Mohr 77. Airborne Fungi and Mycotoxins Chin S. Yang and Eckardt Johanning 78. Airborne Bacteria and Endotoxin Peter S. Thorne 79. Legionellae and Legionnaires' Disease Barry S. Fields 80. Airborne Viruses Syed A. Sattar and M. Khalid Ijaz 81. Aerobiology of Agricultural Pathogens Estelle Levetin SECTION VIII BIOTRANSFORMATION AND BIODEGRADATION VOLUME EDITOR: RONALD L. CRAWFORD, SECTION EDITORS: JONATHAN R. LLOYD AND MING TIEN 82. Overview: Biotransformation and Biodegradation Ronald L. Crawford 83. Functional Gene Arrays for Microbial Community Analysis Terry J. Gentry, Christopher W. Schadt, Zhili He, and Jizhong Zhou 84. Methods for Soil Metagenomics: Extraction and Cloning of Soil DNA Christian S. Riesenfeld, Lynn L. Williamson, and Jo Handelsman 85. Using Genetic Algorithms To Optimize Functions of Microbial Ecosystems Frederik P. J. Vandecasteele, Thomas F. Hess, and Ronald L. Crawford 86. Metagenomic Methods for the Identification of Active Microorganisms and Genes in Biodegradation Processes Don Cowan and William Stafford 87. Proteomic Analysis of Extracellular Enzymes Produced by Wood-Degrading Fungi Ming Tien, Feng Liu, and Hasan Koc 88. Current Progress in the Application of Mycoremediation to Soil Cleanup Richard T. Lamar and R. B. White 89. Fungal Solid-State Fermentation Systems for Bioconversion of Lignocellulosic Biomass: Process Protocol and Applications Chundakkadu Krishna 90. Characterization of Microeukaryota in Natural Environments Janice L. Strap 91. Methods Useful in Assessing Biological and Chemical Activity of Low- Molecular-Weight Brown Rot Fungal Metabolites Jody Jellison, Barry Goodell, and Yuhui Qian 92. Techniques for Studying Uncultured and Cultured Magnetotactic Bacteria Dirk Schuler and Dennis A. Bazylinski 93. Growth of Electrode-Reducing Bacteria Daniel R. Bond 94. Microbially Mediated Anaerobic Iron(II) Oxidation at Circumneutral pH Karrie A. Weber and John D. Coates 95. Isolation, Enumeration, Growth, and Preservation of Acidophilic Prokaryotes Kevin B. Hallberg and D. Barrie Johnson 96. Molecular Techniques for the Study of Toxic Metal Resistance Mechanisms in Bacteria Jon L. Hobman 97. Synchrotron-Based Techniques for Monitoring Metal Transformations Kenneth M. Kemner and Shelly D. Kelly 98. Techniques for Studying Microbial Transformations of Metals and Radionuclides Jonathan R. Lloyd, Terry J. Beveridge, Katherine Morris, David A. Polya, and David J. Vaughan 99. Arsenate-Respiring Bacteria Chad W. Saltikov and Davin Malasarn 100. Biotransformations of Manganese Bradley M. Tebo, Brian G. Clement, and Gregory J. Dick 101. Microbial Fe(III) Reduction: Ecological and Physiological Considerations David E. Cummings and Timothy S. Magnuson
Library of Congress Subject Headings for this publication:
Microbial ecology -- Laboratory manuals.
Sanitary microbiology -- Laboratory manuals.