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Contents Preface v Contributors xi PART I. METHODOLOGIES 1 Global Analysis of Gene Expression by Differential Display: A Mathematical Model Shitao Yang and Peng Liang XXX 2 Automation of Fluorescent Differential Display With Digital Readout Jonathan D. Meade, Yong-jig Cho, Jeffrey S. Fisher, Jamie C. Walden, Zhen Guo, and Peng Liang XXX 3 Ordered Differential Display (ODD) Mikhail V. Matz and Ella A. Meleshkevitch XXX 4 GeneCalling(tm): Transcript Profiling Coupled to a Gene Database Query Richard A. Shimkets XXX 5 High Density Sampling Differential Display of Prokaryotic mRNAs With RAP-PCR Dana M. Walters and Pierre E. Rouviere XXX 6 Vertical Arrays: Microarrays of Complex Mixtures of Nucleic Acids Rosana Risques, Gaelle Rondeau, Martin Judex, Michael McClelland, and John Welsh XXX 7 Automated Pattern Ranking in Differential Display Data Analysis Tero Aittokallio, Pekka Ojala, Timo J. Nevalainen, and Olli S. Nevalainen XXX 8 Linking cDNA-AFLP-Based Gene Expression Patterns and ESTs Ling Qin, Pjotr Prins, and Johannes Helder XXX PART II. APPLICATIONS 9 Differentially Expressed Genes Associated With Hepatitis B Virus HBx and MHBs Protein Function in Hepatocellular Carcinoma Dae-Ghon Kim XXX 10 Identification of Disease Markers by Differential Display: Prion Disease Michael Clinton, Gino Miele, Sunil Nandi, and Derek McBride XXX 11 Saturation Screening for p53 Target Genes by Digital Fluorescent Differential Display Yong-Jig Cho, Susanne Stein, Roger S. Jackson II, and Peng Liang XXX 12 Identification of p53-Regulated Genes by the Method of Differential Display Yunping Lin, Roger P. Leng, and Samuel Benchimol XXX 13 Identification by Differential Display of IL-24 Autocrine Loop Activated by Ras Oncogenes Zhongjia Tan, Mai Wang, and Peng Liang XXX 14 Comprehensive Analysis of Ovarian Gene Expression During Ovulation Using Differential Display Lawrence Espey XXX 15 Functional Analysis of Nocturnin: A Circadian Clock Regulated Gene Identified by Differential Display Julie E. Baggs and Carla B. Green XXX 16 Isolation and Characterization of Anthocyanin 5-O- Glucosyltransferase in Perilla Frutescens Var. Crispa by Differential Display Mami Yamasaki and Kazuki Saito XXX 17 Identification of Target Genes of a Yeast Transcriptional Repressor Bernard Mai and Linda L. Breeden XXX 18 Detection of an mRNA Polymorphism by Differential Display Shan Liang, S. Paul Rossby, Peng Liang, Richard C. Shelton, D. Hal Manier, Amitabha Chakrabarti, and Fridolin Sulser XXX 19 Silencing in Yeast: Identification of Clr4 Targets Sergey V. Ivanov and Alla V. Ivanova XXX 20 Identification of mRNA Bound to RNA Binding Proteins by Differential Display Anne Carr-Schmid, Xinfu Jiao, and Megerditch Kiledjian XXX
Library of Congress Subject Headings for this publication:
Messenger RNA -- Laboratory manuals.
Gene expression -- Research -- Methodology.
Polymerase chain reaction.
DNA fingerprinting.
Gene Expression Profiling -- methods -- Laboratory Manuals.
Gene Expression -- physiology -- Laboratory Manuals.
Molecular Biology -- methods -- Laboratory Manuals.
Oligonucleotide Array Sequence Analysis -- methods -- Laboratory Manuals.