Table of contents for Algorithms on strings, trees, and sequences : computer science and computational biology / Dan Gusfield.


Bibliographic record and links to related information available from the Library of Congress catalog


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Part I. Exact String Matching: The Fundamental String Problem: 1. Exact matching: fundamental preprocessing and first algorithms
2. Exact matching: classical comparison-based methods
3. Exact matching: a deeper look at classical methods
4. Semi-numerical string matching
Part II. Suffix Trees And Their Uses: 5. Introduction to suffix trees
6. Linear time construction of suffix trees
7. First applications of suffix trees
8. Constant time lowest common ancestor retrieval
9. More applications of suffix trees
Part III. Inexact Matching, Sequence Alignment, And Dynamic Programming: 10. The importance of (sub)sequence comparison in molecular biology
11. Core string edits, alignments, and dynamic programming
12. Refining core string edits and alignments
13. Extending the core problems
14. Multiple string comparison: the Holy Grail
15. Sequence database and their uses: the motherlode
Part IV. Currents, Cousins And Cameos: 16. Maps, mapping, sequencing and superstrings
17. Strings and evolutionary trees
18. Three short topics
19. Models of genome-level mutations.


Library of Congress subject headings for this publication: Computer algorithms, Bioinformatics, Molecular biology Data processing