Table of contents for Plant functional genomics / edited by Erich Grotewold.


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Part I. Finding Genes in Complex Plant Systems An Improved Method for Plant BAC Library Construction Meizhong Luo and Rod A. Wing Constructing Gene-Enriched Plant Genomic Libraries Using Methylation Filtration Technology Pablo D. Rabinowicz RescueMu Protocols for Maize Functional Genomics Manish N. Raizada Precious Cells Contain Precious Information: Strategies and Pitfalls in Expression Analysis from a Few Cells Isabelle M. Henry and Dina F. Mandoli Combined ESTs from Plant-Microbe Interactions: Using GC Counting to Determine the Species of Origin Edgar Huitema, Trudy A. Torto, Allison Styer, and Sophien Kamoun Part II. In Silico Prediction of Plant Gene Function Computer Software to Find Genes in Plant Genomic DNA Ramana V. Davuluri and Michael Q. Zhang Genomic Colinearity as a Tool for Plant Gene Isolation Wusirika Ramakrishna and Jeffrey L. Bennetzen Using Natural Allelic Diversity to Evaluate Gene Function Sherry R. Whitt and Edward S. Buckler, IV Quantitative Trait Locus Analysis as a Gene Discovery Tool Michael D. McMullen Part III. Forward and Reverse Genetic Strategies Transposon Tagging Using Activator (Ac) in Maize Thomas P. Brutnell and Liza J. Conrad T-DNA Mutagenesis in Arabidopsis Jose M. Alonso and Anna N. Stepanova Physical and Chemical Mutagenesis Andrea Kodym and Rownak Afza High-Throughput TILLING for Functional Genomics Bradley J. Till, Trenton Colbert, Rachel Tompa, Linda C. Enns, Christine A. Codomo, Jessica E. Johnson, Steven H. Reynolds, Jorja G. Henikoff, Elizabeth A. Greene, Michael N. Steine, Luca Comai, and Steven Henikoff Gene and Enhancer Traps for Gene Discovery Marcela Rojas-Pierce and Patricia S. Springer High-Throughput TAIL-PCR as a Tool to Identify DNA Flanking Insertions Tatjana Singer and Ellen Burke Custom Knock-Outs with Hairpin RNA-Mediated Gene Silencing Susan Varsha Wesley, Qing Liu, Anna Wielopolska, Geoff Ellacott, Neil Smith, Surinder Singh, and Chris Helliwell Virus-Induced Gene Silencing S. P. Dinesh-Kumar, Radhamani Anandalakshmi, Rajendra Marathe, Michael Schiff, and Yule Liu Exploring the Potential of Plant RNase P as a Functional Genomics Tool Dileep K. Pulukkunat, M. L. Stephen Raj, Debasis Pattanayak, Lien B. Lai, and Venkat Gopalan Maintaining Collections of Mutants for Plant Functional Genomics Randy Scholl, Martin M. Sachs, and Doreen Ware Part IV. Gain of Function Approaches Vector Construction for Gene Overexpression as a Tool to Elucidate Gene Function Alan Lloyd T-DNA Activation Tagging Johan Memelink Part V. Phenotypic Profiling as a Tool to Determine Gene Function Expression Profiling Using cDNA Microarrays Suling Zhao and Wesley B. Bruce Open Architecture Expression Profiling of Plant Transcriptomes and Gene Discovery Using GeneCalling® Technology Oswald R. Crasta and Otto Folkerts Proteomics as a Functional Genomics Tool Ulrike Mathesius, Nijat Imin, Siria H. A. Natera, and Barry G. Rolfe Metabolite Profiling as a Functional Genomics Tool Anusha P. Dias, Johnny Brown, Pierluigi Bonello, and Erich Grotewold Growth Stage-Based Phenotypic Profiling of Plants Susanne Kjemtrup, Douglas C. Boyes, Cory Christensen, Amy J. McCaskill, Michelle Hylton, and Keith Davis Index


Library of Congress subject headings for this publication:
Plant molecular genetics.
Plant gene expression.
Genomics.